species:   Rhsol
pid:       PID0606
parent:    Rhi-milR-177
paralog:   
locus:     KB317767.1:1176-1289
matures:   ['UUUGGGCGCAAUGGGAGAGACU', 'UCUGACUUCCCCCCAAAUC']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317767.1:1176-1289

3 out of bounds
17 alignments
16 proper strand
5 stranded perfect matches

                  *********************************************                                                   
UAUUGCACAACAACACCGGGUUUGGGCGCAAUGGGAGAGACUAGUCUGACUUCCCCCCAAAUCCAAUCAGGAUGGGCUGCCCCAUCCUCCCGCACUCAUACUCCUGCCCCUGCG
....(((..........(((((((((......((((((((....)))...))))))))))))))....((((((((....))))))))...(((..........)))...))).
--------------------UUUGGGCGCAAUGGGAGAGACU------------------------------------------------------------------------ l=22 a=0 c
--------------------------------------------UCUGACUUCCCCCCAAAUC--------------------------------------------------- l=19 a=0 c*
---------------------UUGGGCGCAAUGGGAGAGACUAGU--------------------------------------------------------------------- l=24 a=2 ma
--------------------------------------------UCUGACUUCCCCCCAAAUC--------------------------------------------------- l=19 a=0 ma*

--------------ACCuGGUUUGGGCGCAAUGGGAG----------------------------------------------------------------------------- l=23 a=1 
-------------------GcUUGGGCGCAAUGGGAGAGAC------------------------------------------------------------------------- l=22 a=1 
--------------------UUUGGGCGCAAUGGGAGAGAC------------------------------------------------------------------------- l=21 a=1 
---------------------UUGGGCGCAAUGGGAGAGACUAGU--------------------------------------------------------------------- l=24 a=2 (ma)
---------------------UUGGGCGCAAUGGGAGgGACUAGU--------------------------------------------------------------------- l=24 a=1 
---------------------UUGGGCGCAAUGGGAGgGACUAGUCU------------------------------------------------------------------- l=26 a=1 
----------------------UGGGCGCAAUGGGAGAGACUAG---------------------------------------------------------------------- l=22 a=1 
----------------------UGGGCGCAAUGGGAGgGACUAGU--------------------------------------------------------------------- l=23 a=1 
----------------------UGGGCGCAAUGGGAGgGACUAGUC-------------------------------------------------------------------- l=24 a=3 
----------------------UGGGCGCAAUGGGAGgGACUAGUCU------------------------------------------------------------------- l=25 a=2 
-----------------------GGGCGCAAUGGGAGgGACUAGUCU------------------------------------------------------------------- l=24 a=1 
-----------------------------------AGAGACUAGUCUGACUUCCCCC--------------------------------------------------------- l=22 a=1 

mb-00010
ax-1001011
ku-01
ss-111111101100
fn-011
